Habitats in our Watersheds

Longleaf Pine Forests:

Upland habitats are home to many species of plants and animals and play a critical role in water infiltration.

Wetlands:

These important barriers retain excess nutrients and pollutants, trap sediment, and protect us from flooding and wave energy.

Habitat Change:

Development, agriculture, and other human land uses alter the natural landscape.

Seagrass Beds:

Submerged grasses filter water, provide nursery and foraging grounds for wildlife, store carbon, and stabilize sediments.

Oyster Reefs:

These ecosystem engineers provide habitat to fish and shellfish, protect shorelines, and filter water for particles and nutrients.

Oyster Reefs

Oysters are ecosystem engineers that provide habitat for fish, shellfish, and birds. They also help improve water quality by filtering water and stabilizing shorelines. Pensacola Bay oysters are culturally and economically significant and once supported a thriving oyster industry.

  • Declining since the 1980s due to poor water quality and overfishing
  • We no longer have enough oysters to support wild harvest
  • Due to these declines, the oyster industry has turned to oyster aquaculture (farming)
  • There is hope – the community came together to develop a plan and initial funds have been secured to restore up to 1,500 acres of oyster habitat in the next 10 years

980 acres of oyster reef found in 2010

480 acres of oyster reef found in 2021

The Florida Department of Agriculture & Consumer Services (FDACS) is responsible for regular bacterial testing of coastal waters to ensure wild and farmed oysters in the bay are safe to eat.

  • Bacterial monitoring in the bay started in 1985
  • Long term bacteria level trends determine which areas are approved or prohibited for oyster harvesting
  • Additional short term closures may occur in response to environmental conditions
  • The prohibited harvest area was expanded in 2022 due to consistently high bacteria levels, impacting aquaculture operations
  • Bacteria concentrations have been increasing in middle Escambia Bay (just south of I-10) since 2015
  • Efforts are underway to determine bacteria sources and remediate them

Pensacola Bay oyster reefs: 2010 & 2021

Pensacola Bay Fecal Coliform 1985-2024

Help restore our oysters!

  • Volunteer to help build Vertical Oyster Gardens (VOGs)
  • Support restaurants that participate in oyster shell recycling programs
  • Buy locally farmed oysters (when available)
  • Support investments for water quality improvements
  • Donate to help restore our reefs
Seagrass Beds

Seagrasses are plants that grow entirely underwater in marine and brackish waters. They are important nursery habitats for many species, stabilize our shores, and filter our waters. Poor water quality and propeller scarring have historically led to seagrass declines, but in recent years, we have seen stable seagrass coverage.

Mapping efforts are completed every few years to assess the health and coverage of seagrass beds. Why are some years missing data for certain segments of the Bay? Monitoring costs money! Researchers and agencies sometimes have limited resources to complete mapping for the entire bay. We anticipate collecting new seagrass mapping data in 2025 that will be included in the 2027 report.

Lower Pensacola Bay

Improving
  • Large declines from 1960s to 1992 (~630 acres lost)
  • Conditions improved from 1992 to 2012 with an additional 120 acres, but coverage is only about half of what it was in 1960
  • Though 2022 maps show some losses, this is likely due to shifting methodologies and higher resolution information, rather than actual losses

Santa Rosa Sound

  • Large declines from 1960s to 1980s (about half lost)
  • Relatively stable from 1980s to 2022, ranging from 2,800 to 4,600 acres
  • Though 2022 maps show some losses, this is likely due to shifting methodologies and higher resolution information, rather than actual losses

Pensacola Bay Seagrass Surveys 1960-2022

Santa Rosa Sound Seagrass Surveys 1960-2022

Be Seagrass Aware!

  • You can help prevent propeller scarring — trim up your motor when boating over shallow seagrass beds — your motor will thank you too!
  • It’s our goal to complete regular seagrass mapping of Pensacola and Perdido Bays. We need your help to make it happen. Donate here!

Wetlands

Wetlands are important transition zones between terrestrial and aquatic environments. They protect shorelines by buffering wave energy, filter water by trapping sediments and pollutants, and provide habitat for thousands of plants and animals. There are many kinds of wetlands including marshes, bogs, and swamps. The majority of wetlands in our watersheds are located along main river systems and represent large areas of relatively undisturbed habitat.

  • Wetland coverage appears stable over 20 years, but underlying trends show localized losses, potentially due to development in coastal counties
  • These calculations are based on satellite-derived data, which may not accurately represent true wetland conditions and can be influenced by factors such as vegetative cover, seasonal water presence, or sensor limitations

Protect our wetlands!

Pensacola Bay Watershed Wetlands (U.S. Fish and Wildlife Service’s National Wetlands Inventory)

Longleaf Pine Forests

Longleaf pine forests support over 1,200 plant and animal species and play an important role in the history and culture across the Southeastern U.S.

  • These pine forests once covered more than 90 million acres until the 1800s, when the logging industry decimated these forests
  • Prior to logging in the 1800s, these forests covered >90 million acres across the Southeast
  • Less than 3% of the historical range remains in the Southeast
  • These ecosystems are fire dependent and historically burned regularly from lightning strikes
  • Fragmented habitat has reduced the natural burning cycle and prescribed fire is used as a management technique to maintain habitat for important species like the red-cockaded woodpecker and gopher tortoise
  • Natural reforestation and restoration are helping to recover these forests and the wildlife that depend on them
  • A subpopulation of the red-cockaded woodpecker within the Blackwater River and Conecuh National Forests reached recovered status in 2024 (Longleaf Alliance)
Longleaf pine forest. Photo: PPBEP

Pensacola Bay Watershed Longleaf Pine Occurrences

Protect our longleaf pine forests!

Habitat Change

Natural habitats and landscapes are altered as humans shape the land to fit our needs. Land use is continually changing among types, resulting in land conversions that can alternate over time (e.g., forested area is developed, developed area is later reforested). These changes alter habitat availability, water quality and flow, and potentially threaten wildlife and human health.

  • There is an overall increase in habitat change across the watershed, but this is a negative change because we are losing our natural habitats
  • Forest is the main land cover type in our watershed
  • Coastal areas are experiencing rapid development
  • Over the last 20 years (2001-2021):
    • Escambia County (FL)
      • 35% increase in developed land
      • 11% increase in forests
      • 18% loss of wetlands
    • Okaloosa County (FL)
      • 72% increase in developed land
      • 5% increase in forests
      • ~8% loss of agricultural land
    • Santa Rosa County (FL)
      • 72% increase in medium intensity development
      • 53% increase in high intensity development
      • 7% increase in forests
      • 2% loss of wetlands

How you can help

  • Smart city planning can help reduce urban sprawl
  • Talk to your local elected officials! Well-written land development codes can help reduce the impacts of development
  • Support land conservation to help maintain natural habitats
  • Consider a lasting legacy and preserve your land in perpetuity
Downton Milton, FL. Photo: Darryl Boudreau, NWFWMD

Pensacola Bay Watershed National Land Cover Database 2001-2021

Pensacola Bay Watershed Conservation Lands

Seagrass Beds

Seagrasses are plants that grow entirely underwater in marine and brackish waters. They are important nursery habitats for many species, stabilize our shores, and filter our waters. Poor water quality and propeller scarring have historically led to seagrass declines, but in recent years, we have seen stable seagrass coverage.

Mapping efforts are completed every few years to assess the health and coverage of seagrass beds. Why are some years missing data for certain segments of the Bay? Monitoring costs money! Researchers and agencies sometimes have limited resources to complete mapping for the entire bay. We anticipate collecting new seagrass mapping data in 2025 that will be included in the 2027 report.

Lower Perdido Bay

Improving
  • Following a period of decline from 1987 to 2015, there was an increase of ~200 acres  in 2020
  • Though 2022 maps show some losses, this is likely due to shifting methodologies and higher resolution information, rather than actual losses

Big Lagoon

Stable
  • Relatively small declines in coverage from 1960 to 2010
  • Coverage has remained stable around 500-600 acres since 1960
  • Though 2022 maps show some losses, this is likely due to shifting methodologies and higher resolution information, rather than actual losses

Lower Perdido Seagrass Surveys 1940-2022

Big Lagoon Seagrass Surveys 1960-2022

Be Seagrass Aware!

  • You can help prevent propeller scarring — trim up your motor when boating over shallow seagrass beds — your motor will thank you too!
  • It’s our goal to complete regular mapping of Pensacola and Perdido Bays. We need your help to make it happen. Donate here!
Wetlands

Wetlands are important transition zones between terrestrial and aquatic environments. They protect shorelines by buffering wave energy, filter water by trapping sediments and pollutants, and provide habitat for thousands of plants and animals. There are many kinds of wetlands including marshes, bogs, and swamps. The majority of wetlands in our watersheds are located along main river systems and represent large areas of relatively undisturbed habitat. 

  • Wetland coverage appears stable over 20 years, but underlying trends show localized losses, potentially due to development in coastal counties
  • These calculations are based on satellite-derived data, which may not accurately represent true wetland conditions and can be influenced by factors such as vegetative cover, seasonal water presence, or sensor limitations

protect ouR wetlands!

Perdido Bay Watershed Wetlands (U.S. Fish and Wildlife Service’s National Wetlands Inventory)

Longleaf Pine Forests

Longleaf pine forests support over 1,200 plant and animal species and play an important role in the history and culture across the Southeastern U.S.

  • These pine forests once covered more than 90 million acres until the 1800s, when the logging industry decimated these forests
  • Prior to logging in the 1800s, these forests covered >90 million acres across the Southeast
  • Less than 3% of the historical range remains in the Southeast
  • Natural reforestation and restoration are helping to recover these forests
  • These ecosystems are fire dependent and historically burned regularly from lightning strikes
  • Fragmented habitat has reduced the natural burning cycle and prescribed fire is used as a management technique to maintain habitat for important species like the red cockaded woodpecker and gopher tortoise
Longleaf pine forest. Photo: PPBEP

Protect our longleaf pine forests!

Perdido Bay Watershed Longleaf Pine Occurrences

Habitat Change

Natural habitats and landscapes are altered as humans shape the land to fit our needs. Land use is continually changing among types, resulting in land conversions that can alternate over time (e.g., forested area is developed, developed area is later reforested). These changes alter habitat availability, water quality and flow, and potentially threaten wildlife and human health.

  • There is an overall increase in habitat change across the watershed, but this is a negative change because we are losing our natural habitats
  • Forest is the main land cover type in our watershed
  • Coastal areas are experiencing rapid development
  • Over the last 20 years (2001-2021):
    • Baldwin County (AL)
      • 54% increase in medium intensity development
      • 65% increase in high intensity development
      • 6% loss of wetlands
      • 6% loss of agricultural land
    • Escambia County (AL)
      • 44% increase in medium intensity development
      • 36% increase in high intensity development
      • 13% increase in forest
      • 18% loss of wetlands
      • 7% loss of agricultural land

how you can help

  • Smart city planning can help reduce urban sprawl
  • Talk to your local elected officials! Well-written land development codes can help reduce the impacts of development
  • Support land conservation to help maintain natural habitats
  • Consider a lasting legacy and preserve your land in perpetuity
Perdido Key, FL
Photo: Darryl Boudreau, NWFWMD

Pensacola Bay Watershed National Land Cover Database 2001-2021

Perdido Bay Watershed Conservation Lands

Click Here to Learn More About Indicators

Oyster reefs

Oysters are filter feeders that help clean the water by removing excess nutrients and particles from the water column. Oysters also form reefs that provide important structure for fish and other aquatic species to live. Pensacola Bay once supported a thriving oyster industry. Due to water quality declines and overharvesting, oyster populations have been on a steady decline since the 1980s. Top priorities and strategies from the Oyster Fisheries and Habitat Management Plan for Pensacola Bay System were incorporated into the CCMP and the Estuary Program created an Oyster Sub-Committee to guide the plan’s implementation and make sure it is actionable and adaptable. As PPBEP and partners work to restore Pensacola Bay oysters, with targets set to restore about 250 acres over the next 5 years and 1,500 acres over the next 10 years, there is a need for continuous monitoring of our oyster habitat to track the success of these efforts. The 2021 oyster mapping survey and condition assessment will serve as our benchmark for measuring restoration success through time.

Seagrass Beds

Underwater grasses are great indicators of water quality in our bays, bayous, and sounds. These grasses can only grow when enough light reaches the bottom, which means they need good water clarity.  Seagrass beds are also an important habitat for many fish, shellfish, manatees, and more! To assess the health of our seagrass habitats, it is important to track the coverage, species, and condition to know if they are declining, improving, or remaining stable.

In fall 2022, PPBEP funded seagrass monitoring efforts to determine the coverage and condition of seagrass beds throughout the Pensacola and Perdido Bay Systems. Researchers collected data on a variety of indicators including seagrass percent cover by species, macroalgae cover, canopy height, and environmental parameters (e.g., water clarity, chlorophyll-a, light availability). More details coming soon!

Wetlands

Wetlands are threatened by sea-level rise and human impacts (e.g., coastal development), so it is important to monitor and track changes over time to determine what actions need to be taken to conserve or restore these important habitats. A loss of wetlands could result in the decline of water quality and overall health of our watersheds.

In 2021, PPBEP and partners conducted an expansion of EPA’s National Wetland Condition Assessment to assess the health of our estuarine wetlands at 30 sites across the watersheds. These surveys are conducted every 5 years across the Nation’s coasts to collect information on soils, plant species diversity, disturbances, and contaminants. The continuation of this watershed-wide assessment and other monitoring will allow us to effectively track wetland condition and the effectiveness of CCMP actions.

Longleaf Pine Forests

The recovery of longleaf pines is an important metric when measuring the health of our upland and coastal environments. Like wetlands, healthy, dense longleaf pine forests help protect downstream water quality by acting as filters for water as it moves across the landscape.

Restoration and natural reforestation of longleaf pines is important to track, but difficult to measure due to the large areas that forests cover, crossing state lines and private and public properties. The Florida Natural Resources Inventory (FNAI) and The Longleaf Alliance are leading an effort to map the extent of longleaf pines in the southeast. This dataset will allow us to assess the current range of longleaf pines more accurately across the watersheds and prioritize lands for future conservation efforts.

Habitat Change

Poor development and agricultural practices can change the landscape and natural habitats, and in turn threaten wildlife, increase soil transport to our waterways, reduce natural filtration and water storage capacity, and decrease natural flood control. Smart development and best management practices applied to agricultural lands can reduce these negative impacts. Furthermore, the protection of natural habitats as conservation lands is important for preserving the services our habitats provide us, as well as preserving habitat connectivity for wildlife and protecting natural spaces for future generations.

The National Land Cover Database measures how land changes through time as natural and human actions change the landscape. Databases such as these are important to inform future decision making for managing development while still protecting natural habitats.

For more information please see the Appendix.